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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs6088813 1 rs6088821 chr20:33987576 CPNE1 chr20:34213968-34262539:- 0.3 5.93 5.9E-9 Height
THCA cis rs6088813 1 rs6088821 chr20:33987576 GDF5 chr20:33897002-34042568:- -0.18 -4.01 7.04E-5 Height
THCA cis rs6088813 1 rs6088821 chr20:33987576 UQCC chr20:33890383-33999833:- 0.32 10.27 1.7E-22 Height
THCA cis rs6088813 1 rs6088823 chr20:33994265 CPNE1 chr20:34213968-34262539:- 0.3 5.93 5.9E-9 Height
THCA cis rs6088813 1 rs6088823 chr20:33994265 GDF5 chr20:33897002-34042568:- -0.18 -4.01 7.04E-5 Height
THCA cis rs6088813 1 rs6088823 chr20:33994265 UQCC chr20:33890383-33999833:- 0.32 10.27 1.7E-22 Height
THCA cis rs6088813 1 rs6088825 chr20:33995972 CEP250 chr20:34042996-34099802:+ -0.15 -3.45 0.00061 Height
THCA cis rs6088813 1 rs6088825 chr20:33995972 CPNE1 chr20:34213968-34262539:- 0.31 6.02 3.54E-9 Height
THCA cis rs6088813 1 rs6088825 chr20:33995972 GDF5 chr20:33897002-34042568:- -0.19 -4.09 5.15E-5 Height
THCA cis rs6088813 1 rs6088825 chr20:33995972 UQCC chr20:33890383-33999833:- 0.32 10.22 2.67E-22 Height
THCA cis rs2129782 1 rs60894020 chr8:89450964 MMP16 chr8:89049462-89339717:- 0.33 5.31 1.72E-7 Electrodermal activity
THCA cis rs2129782 1 rs60895850 chr8:89412554 MMP16 chr8:89049462-89339717:- 0.31 5.04 6.5E-7 Electrodermal activity
THCA cis rs6089829 1 rs6089828 chr20:61668998 ADRM1 chr20:60878027-60883916:+ 0.09 3.55 0.00043 Prostate cancer (gene x gene interaction)
THCA cis rs6089829 1 rs6089829 chr20:61669036 ADRM1 chr20:60878027-60883916:+ -0.09 -3.54 0.000444 Prostate cancer (gene x gene interaction)
THCA cis rs16895812 1 rs60907095 chr6:42496096 PRPH2 chr6:42664334-42690358:- -0.26 -3.51 0.000494 Obesity-related traits